PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00017899-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 330aa    MW: 37345.4 Da    PI: 4.7585
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00017899-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11163206654
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  WALNUT_00017899-RA 163 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTAILGDTIDYMKEL 206
                         589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.18157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-15160220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-9163206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-12163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.69E-4164210No hitNo description
Gene3DG3DSA:4.10.280.101.6E-14164219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00288256296No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MELTQHSFLE ELLAPRRDTW NTFPNGVNEF FPNDWSIDSL EDNPVLATPN PPLLGFSTPT  60
GPSFECPFSD QVYPSLDGFT EIETSYAKIN EKPLFPSRED YPSMVEDEDL SFLGSESHSM  120
GEKNNGCKVE MDQAADIPAF NMGICGERKC KAKRLEGQPS KNLMAERRRR KRLNDRLSML  180
RSIVPKISKM DRTAILGDTI DYMKELLERI NKLREENIEG GENQFNLMGF QEIQKNEVMV  240
RNSPKFNVER RPYMDTQIGI CCAAKPGLLL STVNTLEALG LEIQHCVISC FNDFSMHASC  300
SEGTQQRALI SSEEIKEALF RNAGYGGRCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165172ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002264407.11e-162PREDICTED: transcription factor bHLH93-like
SwissprotQ9LSL11e-83BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A060A4901e-162A0A060A490_VITRI; Inducer of CBF expression 4
STRINGVIT_00s1312g00010.t011e-161(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-84beta HLH protein 93